Dr. Reema Singh
@ReemaSinghA computational scientist with more than 19 years of research experience | Ph.D. In Computational Biology and Bioinformatics
Language Breakdown
Lines of code distribution across 9 owned repositories
T-Shaped Developer
T-shapedDeep in Perl with broad versatility
Collaboration Network
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Repos
15
PRs
0
Growth
+18%
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Contribution activity over the past year
Vinay K L
@stachyris
Suresh Kumar M
@suresh2014
flodebarre
@flodebarre
Alex Crits-Christoph
@alexcritschristoph
DillonLab
@DillonLab
Top Repositories
A pipeline that assembles short reads into full scaffolds and automatically assigns molecular epidemiological and AMR information to the assembled genomes.
A generic platform for the analysis of high throughput transcriptomics, proteomics, and metabolomics data.
De-novo Transcriptomics Assembly workflow for four Dictyostelium species (e.g.- Dictyostelium discoideum, Polysphondylium pallidum, Dictyostelium Lacteum and Dictyostelium Fasciculatum). This is the standard assembly workflow that should ideally work on any organism.Before normalizing first concatenate all RNAseq data across all samples into a single set of inputs to generate a single reference transcriptomics assembly. Combine all left reads in one file and all right reads in another file. In order to reduce the number, raw reads were normalized using in silico digital normalization implemented in trinity at 50X coverage. The reads were assembled with Trinity using kmer parameter of 25.
Bioinformatics analysis used to determine reinfection and relapse tuberculosis using whole genome sequencing data.
Graphical User Interface (GUI) for the Gen2Epi computational pipeline named Gen2EpiGUI. Gen2Epi facilitates an understandable analysis of N. gonorrhoeae WGS data for users with limited bioinformatics skills.
Identify Differential Expressed Genes in DgcA null mutant and Knock-out samples in Dictyostelium discoideum. The same workflow has been used for the differential expression analysis of Polysphondylium pallidum.
CdMEC-A is a pipeline for identifying and visualizing the genomic proximity of Antibiotic Resistance Genes (ARGs) to Mobile Genetic Elements (MGEs) in Clostridioides difficile
Differential expression analysis of cells infected with EBOV, RESTV, or mocks infected with culture medium
Open Source Impact
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